Chen Keasar: search on Z-Library

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1

Redundancy-Weighting the PDB for Detailed Secondary Structure Prediction Using Deep-Learning Models

Sidi, Tomer, Keasar, Chen, Elofsson, Arne

Journal:

Year:

2020

Language:

english

File:

PDF, 415 KB

english, 2020

2

MOIL: A program for simulations of macromolecules

Ron Elber, Adrian Roitberg, Carlos Simmerling, Robert Goldstein, Haiying Li, Gennady Verkhivker, Chen Keasar, Jing Zhang, Alex Ulitsky

Journal:

Computer Physics Communications

Year:

1995

Language:

english

File:

PDF, 2.28 MB

english, 1995

3

A library of protein surface patches discriminates between native structures and decoys generated by structure prediction servers

Roi Gamliel, Klara Kedem, Rachel Kolodny, Chen Keasar

Journal:

BMC Structural Biology

Year:

2011

Language:

english

File:

PDF, 1.95 MB

english, 2011

4

Prediction of structural stability of short beta-hairpin peptides by molecular dynamics and knowledge-based potentials

Karin Noy, Nir Kalisman, Chen Keasar

Journal:

BMC Structural Biology

Year:

2008

Language:

english

File:

PDF, 290 KB

english, 2008

5

Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities

El-Ad David Amir, Nir Kalisman, Chen Keasar

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 288 KB

english, 2008

6

Structure-based identification of catalytic residues

Ran Yahalom, Dan Reshef, Ayana Wiener, Sagiv Frankel, Nir Kalisman, Boaz Lerner, Chen Keasar

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 576 KB

english, 2011

7

Knowledge-Based Potential for Positioning Membrane-Associated Structures and Assessing Residue-Specific Energetic Contributions

Chaim A. Schramm, Brett T. Hannigan, Jason E. Donald, Chen Keasar, Jeffrey G. Saven, William F. DeGrado, Ilan Samish

Journal:

Year:

2012

Language:

english

File:

PDF, 1.88 MB

english, 2012

8

Simultaneous and coupled energy optimization of homologous proteins: a new tool for structure prediction

Chen Keasar, Ron Elber, Jeffrey Skolnick

Journal:

Folding and Design

Year:

1997

Language:

english

File:

PDF, 206 KB

english, 1997

9

Empirical modifications to the Amber/OPLS potential for predicting the solution conformations of cyclic peptides by vacuum calculations

Chen Keasar, Rakefet Rosenfeld

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 143 KB

english, 1998

10

A Novel Approach to Decoy Set Generation: Designing a Physical Energy Function Having Local Minima with Native Structure Characteristics

Chen Keasar, Michael Levitt

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 3.55 MB

english, 2003

11

A Novel Algorithm for Non-Bonded-List Updating in Molecular Simulations

Maximova, Tatiana, Keasar, Chen

Journal:

Journal of Computational Biology

Year:

2006

Language:

english

File:

PDF, 280 KB

english, 2006

12

Coupling the Folding of Homologous Proteins

Chen Keasar, Dror Tobi, Ron Elber and Jeff Skolnick

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 899 KB

english, 1998

13

Hierarchical self-organization of cytoskeletal active networks

Gordon, Daniel, Bernheim-Groswasser, Anne, Keasar, Chen, Farago, Oded

Journal:

Physical Biology

Year:

2012

Language:

english

File:

PDF, 161 KB

english, 2012

14

Homology as a Tool in Optimization Problems: Structure Determination of 2D Heteropolymers

Keasar, Chen, Elber, Ron

Journal:

Journal of Physical Chemistry

Year:

1995

Language:

english

File:

PDF, 812 KB

english, 1995

15

Purely Structural Protein Scoring Functions Using Support Vector Machine and Ensemble Learning

Mirzaei, Shokoufeh, Sidi, Tomer, Keasar, Chen, Crivelli, Silvia

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.30 MB

english, 2016

16

Methods for estimation of model accuracy in CASP12

Elofsson, Arne, Joo, Keehyoung, Keasar, Chen, Lee, Jooyoung, Maghrabi, Ali H. A., Manavalan, Balachandran, McGuffin, Liam J., Ménendez Hurtado, David, Mirabello, Claudio, Pilstål, Robert, Sidi, Tomer,

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.70 MB

english, 2017

17

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Keasar, Chen, McGuffin, Liam J., Wallner, Björn, Chopra, Gaurav, Adhikari, Badri, Bhattacharya, Debswapna, Blake, Lauren, Bortot, Leandro Oliveira, Cao, Renzhi, Dhanasekaran, B. K., Dimas, Itzhel, Fac

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 5.78 MB

english, 2018